Galaxy History ' GEA-R tools test'


DatasetAnnotation
1: CovENV_Data.csv
9 lines
format: csv, database: ?
Info:
uploaded txt file
1
ENV,TMAXV,TMAXF,TMAXG,TMINV,TMINF,TMING,SHV,SHF,SHG
Batan,21.67,22.87,24.21,8.52,8.96,10.9,4.24,3.836,3.478
Toluca,20.17,19.91,22.02,8.12,7.82,9.95,6.941,7.335,7.041
Obregon,27.05,23.94,28.84,9.78,8.69,12.31,3.846,4.864,3.593
AguaFria,20.68,19.79,21.75,8.4,7.42,10.17,6.901,7.295,7.225
Tlatizapan,24.32,18.93,23.1,9.75,6.16,8.72,6.284,7.091,6.304
2: CovMARKERS_Data.csv
55 lines
format: csv, database: ?
Info:
uploaded csv file
1
GEN,GluA1a,GluA1b,GluB1a,GluB1b,GluB1c,GluB1f,GluB1i,GluD1a,GluD1d,GluA3b,GluA3c,GluA3d,GluA3e,GluA3f,GluB3b,GluB3d,GluB3e,GluB3g,GluB3h,GluB3i,GluB3j,GluD3a,GluD3b,GluD3c,GluD3e
1,0,1,1,0,0,0,0,0,1,0,1,0,0,0,0,0,0,0,1,0,0,0,1,0,0
2,0,1,0,1,0,0,0,1,0,0,0,1,0,0,0,0,0,0,0,1,0,1,0,0,0
3,0,1,0,0,0,0,1,0,1,0,1,0,0,0,0,0,0,0,1,0,0,0,1,0,0
4,0,1,0,0,1,0,0,0,1,0,1,0,0,0,0,0,0,0,1,0,0,0,1,0,0
5,0,1,0,0,1,0,0,0,1,0,1,0,0,0,0,0,0,0,1,0,0,0,0,0,1
3: Yield_Data_for_CovENV.csv
465 lines
format: csv, database: ?
Info:
uploaded csv file
1
ENV,GEN,REP,BLOCK,YLD
Batan,2,1,1,8.67
Batan,3,1,3,6
Batan,4,1,6,6.67
Batan,5,1,6,1.67
Batan,6,1,3,6.67
4: Yield_Data_for_CovMARKERS.csv
649 lines
format: csv, database: ?
Info:
uploaded csv file
1
Env,Rep,Gen,yield
1,1,1,1.2
1,2,1,1.2
2,1,1,1.5
2,2,1,1.5
3,1,1,1.1
12: Final Scores
38 lines
format: csv, database: ?
Info:
Loading required package: methods
Error in library(plotly) : there is no package called ‘plotly’
Calls: AMMISREG -> library
In addition: There were 12 warnings (use warnings() to see them)
Execution halted
mv: cannot stat `Output&22888*/*.html': No s
1
"","TYPE","NAME","YLD","DIM1","DIM2","DIM3"
"1","GEN","10",4.2025,0.451387259886794,0.0635242689278805,0.293513650852017
"2","GEN","11",4.255,-0.301674265741665,-0.139229417779724,-0.500564424766888
"3","GEN","12",3.781875,-0.0442899196365775,-0.123216161070532,-0.0250236235212487
"4","GEN","13",3.49125,-1,-0.0437010286731267,-0.0449544592708634
"5","GEN","14",3.8975,-0.392814034399456,0.110254749081818,-0.203209489276722
13: Gollobs Test
13 lines
format: csv, database: ?
Info:
Loading required package: methods
Error in library(plotly) : there is no package called ‘plotly’
Calls: AMMISREG -> library
In addition: There were 12 warnings (use warnings() to see them)
Execution halted
mv: cannot stat `Output&22888*/*.html': No s
1
"","SS","PORCENT","PORCENAC","DF","MS","F","PROBF"
"ENV",2253.77482,92.62881,92.62881,7,321.96783,559.83284,0
"GEN",39.07863,1.60611,94.23492,28,1.39567,2.42676,0.00018
"ENV*GEN",140.27154,5.76508,100,196,0.71567,1.2444,0.05492
"PC1",55.24554,40.508,40.508,34,1.62487,6.02831,0
"PC2",38.30723,28.08823,68.59623,32,1.1971,4.44127,0
14: Biplot PC1 vs PC2
5.3 KB
format: pdf, database: ?
Info:
Loading required package: methods
Error in library(plotly) : there is no package called ‘plotly’
Calls: AMMISREG -> library
In addition: There were 12 warnings (use warnings() to see them)
Execution halted
mv: cannot stat `Output&22888*/*.html': No s
Image in pdf format
15: Biplot PC2 vs PC3
5.3 KB
format: pdf, database: ?
Info:
Loading required package: methods
Error in library(plotly) : there is no package called ‘plotly’
Calls: AMMISREG -> library
In addition: There were 12 warnings (use warnings() to see them)
Execution halted
mv: cannot stat `Output&22888*/*.html': No s
Image in pdf format
16: Biplot PC1 vs PC3
5.3 KB
format: pdf, database: ?
Info:
Loading required package: methods
Error in library(plotly) : there is no package called ‘plotly’
Calls: AMMISREG -> library
In addition: There were 12 warnings (use warnings() to see them)
Execution halted
mv: cannot stat `Output&22888*/*.html': No s
Image in pdf format
17: PC1 vs Trait
5.2 KB
format: pdf, database: ?
Info:
Loading required package: methods
Error in library(plotly) : there is no package called ‘plotly’
Calls: AMMISREG -> library
In addition: There were 12 warnings (use warnings() to see them)
Execution halted
mv: cannot stat `Output&22888*/*.html': No s
Image in pdf format
21: Final Scores
30 lines
format: csv, database: ?
Info:
Loading required package: estimability
Loading required package: methods
Loading required package: MASS
Loading required package: boot
Loading required package: parallel
1
"","Covariates","X-loadingsf1","X-loadingsf2","GEN","Y-loadingsf1","Y-loadingsf2","ENV","X-Scoresf1","X-Scoresf2"
"1","TMAXV","-0.49534","0.79646","2","-0.60724","-0.31433","AguaFria","0.61428","0.0129"
"2","TMAXF","-0.63046","0.8106","3","0.57554","-0.14312","Ameca","-0.4585","1"
"3","TMAXG","-0.76389","0.60582","4","0.22895","-0.29621","Batan","-0.63475","-0.58758"
"4","TMINV","-0.36214","1","5","0.5574","0.60852","Celaya","0.15019","-0.35846"
"5","TMINF","-0.45306","0.90008","6","1","0.28776","Obregon","-0.70208","-0.19773"
22: Biplot
5.5 KB
format: pdf, database: ?
Info:
Loading required package: estimability
Loading required package: methods
Loading required package: MASS
Loading required package: boot
Loading required package: parallel
Image in pdf format
23: Final Scores
38 lines
format: csv, database: ?
Info:
Loading required package: methods
Error in library(plotly) : there is no package called ‘plotly’
Calls: AMMISREG -> library
In addition: There were 12 warnings (use warnings() to see them)
Execution halted
mv: cannot stat `Output&798*/*.html': No suc
1
"","TYPE","NAME","YLD","DIM1","DIM2","DIM3"
"1","GEN","10",4.2025,0.451387259886794,0.0635242689278805,0.293513650852017
"2","GEN","11",4.255,-0.301674265741665,-0.139229417779724,-0.500564424766888
"3","GEN","12",3.781875,-0.0442899196365775,-0.123216161070532,-0.0250236235212487
"4","GEN","13",3.49125,-1,-0.0437010286731267,-0.0449544592708634
"5","GEN","14",3.8975,-0.392814034399456,0.110254749081818,-0.203209489276722
24: Gollobs Test
13 lines
format: csv, database: ?
Info:
Loading required package: methods
Error in library(plotly) : there is no package called ‘plotly’
Calls: AMMISREG -> library
In addition: There were 12 warnings (use warnings() to see them)
Execution halted
mv: cannot stat `Output&798*/*.html': No suc
1
"","SS","PORCENT","PORCENAC","DF","MS","F","PROBF"
"ENV",2253.77482,92.62881,92.62881,7,321.96783,559.83284,0
"GEN",39.07863,1.60611,94.23492,28,1.39567,2.42676,0.00018
"ENV*GEN",140.27154,5.76508,100,196,0.71567,1.2444,0.05492
"PC1",55.24554,40.508,40.508,34,1.62487,6.02831,0
"PC2",38.30723,28.08823,68.59623,32,1.1971,4.44127,0
25: Biplot PC1 vs PC2
5.3 KB
format: pdf, database: ?
Info:
Loading required package: methods
Error in library(plotly) : there is no package called ‘plotly’
Calls: AMMISREG -> library
In addition: There were 12 warnings (use warnings() to see them)
Execution halted
mv: cannot stat `Output&798*/*.html': No suc
Image in pdf format
26: Biplot PC2 vs PC3
5.3 KB
format: pdf, database: ?
Info:
Loading required package: methods
Error in library(plotly) : there is no package called ‘plotly’
Calls: AMMISREG -> library
In addition: There were 12 warnings (use warnings() to see them)
Execution halted
mv: cannot stat `Output&798*/*.html': No suc
Image in pdf format
27: Biplot PC1 vs PC3
5.3 KB
format: pdf, database: ?
Info:
Loading required package: methods
Error in library(plotly) : there is no package called ‘plotly’
Calls: AMMISREG -> library
In addition: There were 12 warnings (use warnings() to see them)
Execution halted
mv: cannot stat `Output&798*/*.html': No suc
Image in pdf format
28: PC1 vs Trait
5.2 KB
format: pdf, database: ?
Info:
Loading required package: methods
Error in library(plotly) : there is no package called ‘plotly’
Calls: AMMISREG -> library
In addition: There were 12 warnings (use warnings() to see them)
Execution halted
mv: cannot stat `Output&798*/*.html': No suc
Image in pdf format
29: 3d Plot
empty
format: html, database: ?
Info:
Loading required package: methods
Error in library(plotly) : there is no package called ‘plotly’
Calls: AMMISREG -> library
In addition: There were 12 warnings (use warnings() to see them)
Execution halted
mv: cannot stat `Output&798*/*.html': No suc